IL_1JU1_020

3D structure

PDB id

1JU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimer Initiation Sequence of HIV-1Lai Genomic RNA: NMR Solution Structure of the Extended Duplex

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JU1_020 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.2289

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

1JU1|9|A|C|17
1JU1|9|A|G|18
1JU1|9|A|G|19
*
1JU1|9|B|C|28
1JU1|9|B|U|29
1JU1|9|B|G|30

Current chains

Chain A

HIV-1Lai SL1

Chain B

HIV-1Lai SL1

Nearby chains