IL_1JZV_003
3D structure
- PDB id
- 1JZV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of a bulged RNA from the SL2 stem-loop of the HIV-1 psi-RNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.7 Å
Loop
- Sequence
- C(5BU)G*CAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1JZV_003 not in the Motif Atlas
- Geometric match to IL_4WF9_042
- Geometric discrepancy: 0.0997
- The information below is about IL_4WF9_042
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 213
Unit IDs
1JZV|1|A|C|6
1JZV|1|A|5BU|7
1JZV|1|A|G|8
*
1JZV|1|B|C|9
1JZV|1|B|A|10
1JZV|1|B|G|11
Current chains
- Chain A
- 5'-R(*GP*GP*CP*GP*AP*CP*(5BU)P*G)-3'
- Chain B
- 5'-R(*CP*AP*GP*UP*AP*CP*GP*(5IC)P*C)-3'
Nearby chains
- Chain D
- 5'-R(*CP*AP*GP*UP*AP*CP*GP*(5IC)P*C)-3'
Coloring options: