IL_1JZX_034

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCCCUAAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JZX_034 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.1588

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

1JZX|1|A|U|1015
1JZX|1|A|C|1016
1JZX|1|A|C|1017
1JZX|1|A|C|1018
1JZX|1|A|U|1019
1JZX|1|A|A|1020
1JZX|1|A|A|1021
1JZX|1|A|A|1022
*
1JZX|1|A|U|1161
1JZX|1|A|A|1162

Current chains

Chain A

23S rRNA

Nearby chains