IL_1JZX_043

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCA*UGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCA,UGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JZX_043 not in the Motif Atlas

Geometric match to IL_3MOJ_002

Geometric discrepancy: 0.3711

The information below is about IL_3MOJ_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73028.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

1JZX|1|A|C|1063
1JZX|1|A|C|1064
1JZX|1|A|A|1065
*
1JZX|1|A|U|1116
1JZX|1|A|G|1117
1JZX|1|A|G|1118

Current chains

Chain A

23S rRNA

Nearby chains