IL_1JZX_046

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

1JZX|1|A|G|1261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JZX_046 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.1919

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

1JZX|1|A|C|1210
1JZX|1|A|G|1211
1JZX|1|A|U|1212
*
1JZX|1|A|A|1260
1JZX|1|A|G|1261
1JZX|1|A|U|1262
1JZX|1|A|G|1263

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

Ribosomal Protein L4