Motif IL_42997.6 Version IL_42997.6 of this group appears in releases 4.7 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5E81_401 | 5E81 | 0.4960 | 0 | Isolated cWS basepair | 3L | tRNA | C | 67 | G | 68 | A | 69 | * | U | 4 | C | 5 | G | 6 | cWW | cWS | cWW |
| 2 | IL_8B0X_105 | 8B0X | 0.2363 | 1 | Isolated cWS basepair (H) | a | LSU rRNA | C | 1198 | G | 1199 | U | 1200 | * | A | 1249 | U | 1251 | G | 1252 | cWW | cWS | cWW |
| 3 | IL_4WF9_044 | 4WF9 | 0.1662 | 1 | Isolated cWS basepair | X | LSU rRNA | C | 1235 | G | 1236 | U | 1237 | * | A | 1285 | U | 1287 | G | 1288 | cWW | cWS | cWW |
| 4 | IL_9DFE_044 | 9DFE | 0.1834 | 1 | Isolated cWS basepair | 1A | LSU rRNA | C | 1196 | G | 1197 | U | 1198 | * | A | 1247 | U | 1249 | G | 1250 | cWW | cWS | cWW |
| 5 | IL_7A0S_041 | 7A0S | 0.1495 | 1 | Isolated cWS basepair | X | LSU rRNA | C | 1210 | G | 1211 | U | 1212 | * | A | 1260 | U | 1262 | G | 1263 | cWW | cWS | cWW |
| 6 | IL_9E6Q_049 | 9E6Q | 0.0977 | 1 | Isolated cWS basepair (H) | 1 | LSU rRNA | C | 1324 | G | 1325 | C | 1326 | * | G | 1374 | C | 1376 | G | 1377 | cWW | cWS | cWW |
| 7 | IL_8OI5_058 | 8OI5 | 0.0865 | 1 | 1 | LSU rRNA | C | 1372 | G | 1373 | U | 1374 | * | A | 1424 | U | 1426 | G | 1427 | cWW | cWS | cWW | |
| 8 | IL_8P9A_285 | 8P9A | 0.0784 | 1 | Isolated cWS basepair | AR | LSU rRNA | C | 1376 | G | 1377 | U | 1378 | * | A | 1428 | U | 1430 | G | 1431 | cWW | cWS | cWW |
| 9 | IL_8GLP_084 | 8GLP | 0.0774 | 1 | Isolated cWS basepair (H) | L5 | LSU rRNA | C | 2290 | G | 2291 | C | 2292 | * | G | 2342 | U | 2344 | G | 2345 | cWW | cWS | cWW |
| 10 | IL_9H3G_061 | 9H3G | 0.0706 | 1 | A | LSU rRNA | C | 1386 | G | 1387 | C | 1388 | * | G | 1437 | U | 1439 | G | 1440 | cWW | cWS | cWW | |
| 11 | IL_4V9F_046 | 4V9F | 0.0000 | 1 | Isolated cWS basepair | 0 | LSU rRNA | C | 1301 | G | 1302 | C | 1303 | * | G | 1351 | C | 1353 | G | 1354 | cWW | cWS | cWW |
| 12 | IL_1U6B_001 | 1U6B | 0.2814 | 1 | Isolated non-canonical cWW pair | B | 197-MER | C | 29 | A | 30 | C | 31 | * | G | 19 | C | 20 | G | 22 | cWW | ncWW | cWW |
| 13 | IL_9DFE_029 | 9DFE | 0.3646 | 0 | Isolated cWS basepair | 1A | LSU rRNA | U | 905 | G | 906 | U | 907 | * | A | 870 | U | 871 | A | 872 | cWW | cWS | cWW |
| 14 | IL_9H3G_111 | 9H3G | 0.3377 | 0 | A | LSU rRNA | G | 2647 | G | 2648 | UY1 | 2649 | * | A | 2627 | U | 2628 | C | 2629 | cWW | cWS | cWW | |
| 15 | IL_7A0S_030 | 7A0S | 0.4471 | 0 | Isolated non-canonical cWW pair | X | LSU rRNA | U | 917 | A | 918 | U | 919 | * | A | 883 | C | 884 | A | 885 | cWW | cWW | |
| 16 | IL_2ZI0_001 | 2ZI0 | 0.4547 | 0 | Isolated near cWW basepair | C+D | RNA (21-mer) | U | 9 | U | 10 | A | 11 | * | U | 9 | U | 10 | A | 11 | cWW | cWW | |
| 17 | IL_8P9A_395 | 8P9A | 0.4318 | 0 | Isolated non-canonical cWW pair | sR | SSU rRNA | C | 411 | A | 412 | U | 413 | * | A | 420 | A | 421 | G | 422 | cWW | ncwW | cWW |
| 18 | IL_8GLP_325 | 8GLP | 0.3967 | 0 | Isolated non-canonical cWW pair (H) | S2 | SSU rRNA | C | 459 | A | 460 | U | 461 | * | A2M | 468 | A | 469 | G | 470 | cWW | cWW | |
| 19 | IL_8CRE_412 | 8CRE | 0.4256 | 0 | Isolated cWS basepair | CM | SSU rRNA | A | 418 | A | 419 | G | 420 | * | C | 409 | A | 410 | U | 411 | cWW | cWW | |
| 20 | IL_3NJ7_003 | 3NJ7 | 0.4189 | 0 | Isolated non-canonical cWW pair | C+D | RNA (10-mer) | C | 3 | A | 4 | G | 5 | * | C | 6 | A | 7 | G | 8 | cWW | cWW | |
| 21 | IL_3NJ7_004 | 3NJ7 | 0.4189 | 0 | Isolated non-canonical cWW pair | D+C | RNA (10-mer) | C | 3 | A | 4 | G | 5 | * | C | 6 | A | 7 | G | 8 | cWW | cWW | |
| 22 | IL_9H3G_177 | 9H3G | 0.3844 | 0 | h1 | SSU rRNA | A2M | 422 | A | 423 | G | 424 | * | C | 413 | A | 414 | PSU | 415 | cWW | cWW | ||
| 23 | IL_7VFT_002 | 7VFT | 0.4141 | 0 | Isolated non-canonical cWW pair | A | RNA (23-mer) | C | 8||||12_555 | A | 9||||12_555 | G | 10||||12_555 | * | C | 14 | A | 15 | G | 16 | cWW | cWW | |
| 24 | IL_4V9F_077 | 4V9F | 0.4147 | 0 | Isolated non-canonical cWW pair | 0 | LSU rRNA | G | 2237 | A | 2238 | C | 2239 | * | G | 2136 | A | 2137 | C | 2138 | cWW | ncWW | |
| 25 | IL_7VFT_001 | 7VFT | 0.5253 | 0 | Isolated non-canonical cWW contact | A | RNA (23-mer) | C | 17 | A | 18 | G | 19 | * | C | 5||||12_555 | A | 6||||12_555 | G | 7||||12_555 | cWW | cWW | |
| 26 | IL_8GLP_043 | 8GLP | 0.5261 | 2 | L5 | LSU rRNA | G | 1213 | C | 1216 | G | 1217 | * | C | 1082 | U | 1083 | C | 1084 | cWW | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGU*AGUG | 6 |
| CAG*CAG | 4 |
| CGC*GACG | 2 |
| CGC*GGUG | 2 |
| CGA*UCG | 1 |
| CAC*GCCG | 1 |
| UGU*AUA | 1 |
| GG(UY1)*AUC | 1 |
| UAU*ACA | 1 |
| UUA*UUA | 1 |
| CAU*AAG | 1 |
| CAU*(A2M)AG | 1 |
| AAG*CAU | 1 |
| (A2M)AG*CA(PSU) | 1 |
| GAC*GAC | 1 |
| GCCCG*CUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*A | 9 |
| G*GU | 8 |
| G*AC | 2 |
| G*U | 2 |
| G*C | 1 |
| A*CC | 1 |
| A*C | 1 |
| U*U | 1 |
| CCC*U | 1 |
Release history
| Release | 4.7 |
|---|---|
| Date | 2026-02-25 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated cWS basepair (8)
- Isolated non-canonical cWW pair (7)
- (5)
- Isolated cWS basepair (H) (3)
- Isolated near cWW basepair (1)
- Isolated non-canonical cWW contact (1)
- Isolated non-canonical cWW pair (H) (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.01 | Avg 0.35 | Max 0.71
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