IL_1JZZ_008

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JZZ_008 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.1557

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

1JZZ|1|A|G|215
1JZZ|1|A|U|216
1JZZ|1|A|U|217
1JZZ|1|A|A|218
1JZZ|1|A|G|219
1JZZ|1|A|U|220
1JZZ|1|A|A|221
1JZZ|1|A|G|222
*
1JZZ|1|A|C|230
1JZZ|1|A|G|231
1JZZ|1|A|A|232
1JZZ|1|A|A|233
1JZZ|1|A|C|234
1JZZ|1|A|C|235
1JZZ|1|A|C|236

Current chains

Chain A

23S rRNA

Nearby chains