IL_1JZZ_077

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

1JZZ|1|A|C|2038, 1JZZ|1|A|C|2591, 1JZZ|1|A|U|2592, 1JZZ|1|A|A|2593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JZZ_077 not in the Motif Atlas

Homologous match to IL_7RQB_079

Geometric discrepancy: 0.3471

The information below is about IL_7RQB_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

1JZZ|1|A|A|2037
1JZZ|1|A|C|2038
1JZZ|1|A|G|2039
1JZZ|1|A|A|2040
*
1JZZ|1|A|U|2590
1JZZ|1|A|C|2591
1JZZ|1|A|U|2592
1JZZ|1|A|A|2593
1JZZ|1|A|U|2594

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

Ribosomal Protein L22

Chain M

Ribosomal Protein L32