IL_1JZZ_101

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

1JZZ|1|A|G|2760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JZZ_101 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1654

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

1JZZ|1|A|U|2615
1JZZ|1|A|U|2616
1JZZ|1|A|G|2617
1JZZ|1|A|A|2618
1JZZ|1|A|G|2619
*
1JZZ|1|A|C|2754
1JZZ|1|A|A|2755
1JZZ|1|A|A|2756
1JZZ|1|A|G|2757
1JZZ|1|A|A|2758
1JZZ|1|A|U|2759
1JZZ|1|A|G|2760
1JZZ|1|A|A|2761
1JZZ|1|A|G|2762

Current chains

Chain A

23S rRNA

Nearby chains