IL_1K01_008

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_008 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.1523

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

1K01|1|A|G|215
1K01|1|A|U|216
1K01|1|A|U|217
1K01|1|A|A|218
1K01|1|A|G|219
1K01|1|A|U|220
1K01|1|A|A|221
1K01|1|A|G|222
*
1K01|1|A|C|230
1K01|1|A|G|231
1K01|1|A|A|232
1K01|1|A|A|233
1K01|1|A|C|234
1K01|1|A|C|235
1K01|1|A|C|236

Current chains

Chain A

23S rRNA

Nearby chains