IL_1K01_011

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAG*CGAACG

Length

10 nucleotides

Bulged bases

1K01|1|A|A|357, 1K01|1|A|C|358

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_011 not in the Motif Atlas

Homologous match to IL_7A0S_008

Geometric discrepancy: 0.5292

The information below is about IL_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05192.8

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

1K01|1|A|C|303
1K01|1|A|A|304
1K01|1|A|A|305
1K01|1|A|G|306
*
1K01|1|A|C|354
1K01|1|A|G|355
1K01|1|A|A|356
1K01|1|A|A|357
1K01|1|A|C|358
1K01|1|A|G|359

Current chains

Chain A

23S rRNA

Nearby chains