IL_1K01_020

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAAAC*GCGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_020 not in the Motif Atlas

Homologous match to IL_7A0S_018

Geometric discrepancy: 0.1514

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.2

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

7

Unit IDs

1K01|1|A|U|716
1K01|1|A|G|717
1K01|1|A|A|718
1K01|1|A|A|719
1K01|1|A|A|720
1K01|1|A|C|721
*
1K01|1|A|G|736
1K01|1|A|C|737
1K01|1|A|G|738
1K01|1|A|G|739
1K01|1|A|A|740
1K01|1|A|G|741

Current chains

Chain A

23S rRNA

Nearby chains