IL_1K01_034

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UCCCUAAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_034 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.1574

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

1K01|1|A|U|1015
1K01|1|A|C|1016
1K01|1|A|C|1017
1K01|1|A|C|1018
1K01|1|A|U|1019
1K01|1|A|A|1020
1K01|1|A|A|1021
1K01|1|A|A|1022
*
1K01|1|A|U|1161
1K01|1|A|A|1162

Current chains

Chain A

23S rRNA

Nearby chains