IL_1K01_039

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UCG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UCG,CGA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_039 not in the Motif Atlas

Homologous match to IL_4WF9_042

Geometric discrepancy: 0.5491

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

1K01|1|A|U|1048
1K01|1|A|C|1049
1K01|1|A|G|1050
*
1K01|1|A|C|1127
1K01|1|A|G|1128
1K01|1|A|A|1129

Current chains

Chain A

23S rRNA

Nearby chains