IL_1K01_052

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAGG*CGCAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_052 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.1366

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

1K01|1|A|U|1370
1K01|1|A|G|1371
1K01|1|A|A|1372
1K01|1|A|G|1373
1K01|1|A|G|1374
*
1K01|1|A|C|1383
1K01|1|A|G|1384
1K01|1|A|C|1385
1K01|1|A|A|1386
1K01|1|A|G|1387

Current chains

Chain A

23S rRNA

Nearby chains