IL_1K01_057

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAU*AAACG

Length

9 nucleotides

Bulged bases

1K01|1|A|C|1570

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_057 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.1632

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

1K01|1|A|C|1451
1K01|1|A|U|1452
1K01|1|A|A|1453
1K01|1|A|U|1454
*
1K01|1|A|A|1567
1K01|1|A|A|1568
1K01|1|A|A|1569
1K01|1|A|C|1570
1K01|1|A|G|1571

Current chains

Chain A

23S rRNA

Nearby chains