RNA 3D Hub //

Motif IL_99646.2 Version IL_99646.2 of this group appears in releases 3.91 to 3.98

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_7A0S_0537A0S0.13621tSH-tHWX LSU rRNAC1451U1452A1453U1454*A1567A1568A1569G1571cWWtWHtHScWW
2 IL_5J7L_2975J7L0.00001tSH-tHWDA LSU rRNAC1437U1438A1439U1440*A1551A1552A1553G1555cWWtWHtHScWW
3 IL_9DFE_0569DFE0.148611A LSU rRNAC1437U1438A1439G1440*C1551G1552A1553G1555cWWtWHtHScWW
4 IL_9DFE_0099DFE0.210311A LSU rRNAA357U358A359G360*C280G281A282U284cWWtWHtHScWW
5 IL_2ZY6_0012ZY60.18271tSH-tHWAphenylalanyl transfer RNAA7U8A9G10*C25G26A27U29cWWtWHntHScWW
6 IL_4WF9_0544WF90.30121Other ILX LSU rRNAC1624U1625A1626G1627*C1461G1462A1463G1465cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUAU*AAACG1
CUAU*AAAUG1
CUAG*CGAAG1
AUAG*CGAAU1
AUAG*CGAGU1
CUAG*CGAUG1
Non-Watson-Crick part of the motif
SequenceCounts
UA*GAA2
UA*AAC1
UA*AAU1
UA*GAG1
UA*GAU1

Release history

Release3.913.923.933.943.953.963.973.98
Date2024-12-042025-01-012025-01-292025-02-262025-03-262025-04-232025-05-212025-06-18
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tSH-tHW (3)
  • (2)
  • Other IL (1)
    • Basepair signature
    cWW-tWH-tHS-cWW
    Heat map statistics
    Min 0.13 | Avg 0.20 | Max 0.34
    Help

    Coloring options:

    IL_7A0S_053:IL_7A0S_053 = 0IL_7A0S_053:IL_5J7L_297 = 0.1362IL_7A0S_053:IL_9DFE_056 = 0.192IL_7A0S_053:IL_9DFE_009 = 0.2509IL_7A0S_053:IL_2ZY6_001 = 0.2431IL_7A0S_053:IL_4WF9_054 = 0.3291IL_5J7L_297:IL_7A0S_053 = 0.1362IL_5J7L_297:IL_5J7L_297 = 0IL_5J7L_297:IL_9DFE_056 = 0.1486IL_5J7L_297:IL_9DFE_009 = 0.2103IL_5J7L_297:IL_2ZY6_001 = 0.1827IL_5J7L_297:IL_4WF9_054 = 0.3012IL_9DFE_056:IL_7A0S_053 = 0.192IL_9DFE_056:IL_5J7L_297 = 0.1486IL_9DFE_056:IL_9DFE_056 = 0IL_9DFE_056:IL_9DFE_009 = 0.1294IL_9DFE_056:IL_2ZY6_001 = 0.2221IL_9DFE_056:IL_4WF9_054 = 0.3108IL_9DFE_009:IL_7A0S_053 = 0.2509IL_9DFE_009:IL_5J7L_297 = 0.2103IL_9DFE_009:IL_9DFE_056 = 0.1294IL_9DFE_009:IL_9DFE_009 = 0IL_9DFE_009:IL_2ZY6_001 = 0.216IL_9DFE_009:IL_4WF9_054 = 0.335IL_2ZY6_001:IL_7A0S_053 = 0.2431IL_2ZY6_001:IL_5J7L_297 = 0.1827IL_2ZY6_001:IL_9DFE_056 = 0.2221IL_2ZY6_001:IL_9DFE_009 = 0.216IL_2ZY6_001:IL_2ZY6_001 = 0IL_2ZY6_001:IL_4WF9_054 = 0.3173IL_4WF9_054:IL_7A0S_053 = 0.3291IL_4WF9_054:IL_5J7L_297 = 0.3012IL_4WF9_054:IL_9DFE_056 = 0.3108IL_4WF9_054:IL_9DFE_009 = 0.335IL_4WF9_054:IL_2ZY6_001 = 0.3173IL_4WF9_054:IL_4WF9_054 = 0IL_7A0S_053IL_5J7L_297IL_9DFE_056IL_9DFE_009IL_2ZY6_001IL_4WF9_054Discrepancy0.000.050.100.150.200.250.30
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