Motif IL_99646.2 Version IL_99646.2 of this group appears in releases 3.91 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_054 | 4WF9 | 0.3012 | 1 | Other IL | X | LSU rRNA | C | 1624 | U | 1625 | A | 1626 | G | 1627 | * | C | 1461 | G | 1462 | A | 1463 | G | 1465 | cWW | cWW | ||
| 2 | IL_2ZY6_001 | 2ZY6 | 0.1827 | 1 | tSH-tHW | A | phenylalanyl transfer RNA | A | 7 | U | 8 | A | 9 | G | 10 | * | C | 25 | G | 26 | A | 27 | U | 29 | cWW | tWH | ntHS | cWW |
| 3 | IL_9DFE_009 | 9DFE | 0.2103 | 1 | 1A | LSU rRNA | A | 357 | U | 358 | A | 359 | G | 360 | * | C | 280 | G | 281 | A | 282 | U | 284 | cWW | tWH | tHS | cWW | |
| 4 | IL_9DFE_056 | 9DFE | 0.1486 | 1 | 1A | LSU rRNA | C | 1437 | U | 1438 | A | 1439 | G | 1440 | * | C | 1551 | G | 1552 | A | 1553 | G | 1555 | cWW | tWH | tHS | cWW | |
| 5 | IL_5J7L_297 | 5J7L | 0.0000 | 1 | tSH-tHW | DA | LSU rRNA | C | 1437 | U | 1438 | A | 1439 | U | 1440 | * | A | 1551 | A | 1552 | A | 1553 | G | 1555 | cWW | tWH | tHS | cWW |
| 6 | IL_7A0S_053 | 7A0S | 0.1362 | 1 | tSH-tHW | X | LSU rRNA | C | 1451 | U | 1452 | A | 1453 | U | 1454 | * | A | 1567 | A | 1568 | A | 1569 | G | 1571 | cWW | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAG*CGAUG | 1 |
| AUAG*CGAGU | 1 |
| AUAG*CGAAU | 1 |
| CUAG*CGAAG | 1 |
| CUAU*AAAUG | 1 |
| CUAU*AAACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*GAA | 2 |
| UA*GAU | 1 |
| UA*GAG | 1 |
| UA*AAU | 1 |
| UA*AAC | 1 |
Release history
| Release | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|
| Date | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tSH-tHW (3)
- (2)
- Other IL (1)
- Basepair signature
- cWW-tWH-tHS-cWW
- Heat map statistics
- Min 0.13 | Avg 0.20 | Max 0.34
Coloring options: