IL_1K01_070

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

1K01|1|A|C|1792, 1K01|1|A|C|1808, 1K01|1|A|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_070 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.2033

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

1K01|1|A|U|1789
1K01|1|A|G|1790
1K01|1|A|C|1791
1K01|1|A|C|1792
1K01|1|A|A|1793
1K01|1|A|A|1794
1K01|1|A|C|1795
*
1K01|1|A|G|1805
1K01|1|A|G|1806
1K01|1|A|A|1807
1K01|1|A|C|1808
1K01|1|A|G|1809
1K01|1|A|U|1810
1K01|1|A|A|1811
1K01|1|A|U|1812
1K01|1|A|A|1813

Current chains

Chain A

23S rRNA

Nearby chains