IL_1K01_085

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_085 not in the Motif Atlas

Homologous match to IL_7A0S_081

Geometric discrepancy: 0.1976

The information below is about IL_7A0S_081

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

1K01|1|A|C|2329
1K01|1|A|G|2330
1K01|1|A|A|2331
1K01|1|A|G|2332
*
1K01|1|A|C|2343
1K01|1|A|G|2344
1K01|1|A|A|2345
1K01|1|A|G|2346

Current chains

Chain A

23S rRNA

Nearby chains