IL_1K01_093

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

1K01|1|A|G|2555, 1K01|1|A|A|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_093 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.1469

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

1K01|1|A|C|2489
1K01|1|A|U|2490
1K01|1|A|C|2491
*
1K01|1|A|G|2553
1K01|1|A|C|2554
1K01|1|A|G|2555
1K01|1|A|A|2556
1K01|1|A|G|2557

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

Ribosomal Protein L32