Motif IL_54650.3 Version IL_54650.3 of this group appears in releases 3.90 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_108 | 5TBW | 0.2352 | 2 | Isolated non-canonical cWW with bulges | 1 | LSU rRNA | C | 2879 | U | 2880 | C | 2881 | * | G | 2943 | U | 2944 | G | 2947 | cWW | cWw | cWW |
| 2 | IL_8C3A_116 | 8C3A | 0.2124 | 2 | Isolated non-canonical cWW with bulges (H) | 1 | LSU rRNA | C | 2851 | U | 2852 | C | 2853 | * | G | 2915 | U | 2916 | G | 2919 | cWW | cWw | cWW |
| 3 | IL_4V9F_087 | 4V9F | 0.2102 | 2 | Isolated non-canonical cWW pair | 0 | LSU rRNA | U | 2545 | U | 2546 | C | 2547 | * | G | 2609 | U | 2610 | G | 2613 | cWW | cWw | cWW |
| 4 | IL_7A0S_089 | 7A0S | 0.1156 | 2 | Isolated non-canonical cWW with bulges | X | LSU rRNA | C | 2489 | U | 2490 | C | 2491 | * | G | 2553 | C | 2554 | G | 2557 | cWW | cWW | |
| 5 | IL_4WF9_095 | 4WF9 | 0.0000 | 2 | Isolated non-canonical cWW with bulges | X | LSU rRNA | C | 2537 | U | 2538 | C | 2539 | * | G | 2601 | C | 2602 | G | 2605 | cWW | ncWW | cWW |
| 6 | IL_8VTW_096 | 8VTW | 0.1159 | 2 | Isolated non-canonical cWW with bulges (H) | 1A | LSU rRNA | C | 2510 | U | 2511 | C | 2512 | * | G | 2574 | C | 2575 | G | 2578 | cWW | ncWW | cWW |
| 7 | IL_5J7L_340 | 5J7L | 0.1078 | 2 | Isolated non-canonical cWW with bulges | DA | LSU rRNA | C | 2510 | U | 2511 | C | 2512 | * | G | 2574 | C | 2575 | G | 2578 | cWW | ncWW | cWW |
| 8 | IL_4PKD_001 | 4PKD | 0.1887 | 1 | Isolated non-canonical cWW with bulges | V | U1 snRNA stem-loops 1 and 2 (55-MER) | G | 106 | U | 107 | U | 108 | * | A | 86 | U | 87 | C | 89 | cWW | cWw | cWW |
| 9 | IL_5ML7_010 | 5ML7 | 0.3434 | 1 | Isolated non-canonical cWW with bulges | B | 23S ribosomal RNA | U | 2181 | A | 2182 | C | 2183 | * | G | 2196 | C | 2197 | A | 2199 | cWW | cWW | cWW |
| 10 | IL_4V9F_097 | 4V9F | 0.3323 | 1 | Isolated non-canonical cWW with bulges | 0 | LSU rRNA | G | 2855 | A | 2856 | C | 2857 | * | G | 2900 | C | 2901 | C | 2903 | cWW | ncWW | cWW |
| 11 | IL_7DLZ_003 | 7DLZ | 0.3809 | 1 | X | RNA (45-MER) | G | 12 | A | 13 | G | 14 | * | C | 33 | C | 34 | C | 36 | ncWW | cWW | ||
| 12 | IL_7A0S_112 | 7A0S | 0.4138 | 1 | Y | 5S rRNA | C | 19 | A | 20 | C | 21 | * | G | 66 | C | 67 | G | 69 | ncWW | ncWW | ncWW | |
| 13 | IL_7ELQ_002 | 7ELQ | 0.4154 | 2 | A | NMT1 RNA | C | 15 | A | 16 | G | 17 | * | C | 32 | C | 33 | G | 36 | cWW | ncWS | cWW | |
| 14 | IL_8C3A_151 | 8C3A | 0.5457 | 1 | 4 | 5.8S rRNA | U | 64 | A | 65 | A | 66 | * | U | 93 | C | 94 | A | 96 | cWW | ncWS | ncWW | |
| 15 | IL_5TBW_145 | 5TBW | 0.5378 | 1 | Isolated non-canonical cWW pair | 4 | 5.8S rRNA | U | 64 | A | 65 | A | 66 | * | U | 93 | C | 94 | A | 96 | cWW | ncWW | cWW |
| 16 | IL_8P4V_144 | 8P4V | 0.5302 | 1 | 4 | 5.8S rRNA | U | 64 | A | 65 | A | 66 | * | U | 93 | C | 94 | A | 96 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUC*GCGAG | 4 |
| UAA*UCGA | 3 |
| CUC*GUGAG | 2 |
| UUC*GUGAG | 1 |
| GUU*AUAC | 1 |
| UAC*GCCA | 1 |
| GAC*GCAC | 1 |
| GAG*CCAC | 1 |
| CAC*GCAG | 1 |
| CAG*CCCGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*CGA | 4 |
| U*UGA | 3 |
| A*CA | 3 |
| A*CG | 3 |
| U*UA | 1 |
| A*CC | 1 |
| A*CCG | 1 |
Release history
| Release | 3.90 |
|---|---|
| Date | 2024-11-06 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW with bulges (7)
- (5)
- Isolated non-canonical cWW pair (2)
- Isolated non-canonical cWW with bulges (H) (2)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.34 | Max 0.69
Coloring options: