IL_1K01_100

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_100 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.1892

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

1K01|1|A|C|2631
1K01|1|A|U|2632
1K01|1|A|A|2633
1K01|1|A|G|2634
1K01|1|A|U|2635
1K01|1|A|A|2636
1K01|1|A|C|2637
*
1K01|1|A|G|2642
1K01|1|A|G|2643
1K01|1|A|A|2644
1K01|1|A|C|2645
1K01|1|A|C|2646
1K01|1|A|G|2647

Current chains

Chain A

23S rRNA

Nearby chains