IL_1K01_104

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

1K01|1|A|A|2745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_104 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1757

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

1K01|1|A|G|2717
1K01|1|A|A|2718
1K01|1|A|U|2719
1K01|1|A|A|2720
1K01|1|A|A|2721
1K01|1|A|C|2722
*
1K01|1|A|G|2742
1K01|1|A|G|2743
1K01|1|A|A|2744
1K01|1|A|A|2745
1K01|1|A|G|2746
1K01|1|A|C|2747

Current chains

Chain A

23S rRNA

Nearby chains