Motif IL_49767.8 Version IL_49767.8 of this group appears in releases 3.91 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_108 | 7A0S | 0.4487 | 1 | X | LSU rRNA | U | 1592 | C | 1593 | U | 1594 | A | 1595 | A | 1596 | A | 1597 | * | U | 1431 | G | 1432 | A | 1433 | G | 1435 | G | 1436 | cWW | ntWH | cWW | |||
| 2 | IL_4V9F_096 | 4V9F | 0.1086 | 1 | UAA/GAN with extra cWW | 0 | LSU rRNA | G | 2772 | G | 2773 | U | 2774 | A | 2775 | A | 2776 | G | 2777 | * | C | 2797 | G | 2798 | A | 2799 | A | 2801 | C | 2802 | cWW | cWW | tWH | tHS | cWW |
| 3 | IL_4WF9_104 | 4WF9 | 0.1121 | 1 | UAA/GAN with extra cWW | X | LSU rRNA | G | 2764 | A | 2765 | U | 2766 | A | 2767 | A | 2768 | G | 2769 | * | U | 2789 | G | 2790 | A | 2791 | G | 2793 | C | 2794 | cWW | cWW | tWH | tHS | cWW |
| 4 | IL_9DFE_106 | 9DFE | 0.0926 | 1 | 1A | LSU rRNA | G | 2737 | A | 2738 | U | 2739 | A | 2740 | A | 2741 | C | 2742 | * | G | 2762 | G | 2763 | A | 2764 | G | 2766 | C | 2767 | cWW | cWW | tWH | tHS | cWW | |
| 5 | IL_7A0S_098 | 7A0S | 0.0000 | 1 | UAA/GAN with extra cWW | X | LSU rRNA | G | 2717 | A | 2718 | U | 2719 | A | 2720 | A | 2721 | C | 2722 | * | G | 2742 | G | 2743 | A | 2744 | G | 2746 | C | 2747 | cWW | cWW | tWH | tHS | cWW |
| 6 | IL_5J7L_350 | 5J7L | 0.1227 | 1 | UAA/GAN with extra cWW | DA | LSU rRNA | G | 2737 | A | 2738 | U | 2739 | A | 2740 | A | 2741 | G | 2742 | * | C | 2762 | G | 2763 | A | 2764 | A | 2766 | C | 2767 | cWW | cwW | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAAC*GGAAGC | 2 |
| UCUAAA*UGAUGG | 1 |
| GGUAAG*CGAAAC | 1 |
| GAUAAG*UGAAGC | 1 |
| GAUAAG*CGAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAA*GAAG | 3 |
| CUAA*GAUG | 1 |
| GUAA*GAAA | 1 |
| AUAA*GAAA | 1 |
- Annotations
-
- UAA/GAN with extra cWW (4)
- (2)
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.19 | Max 0.46
Coloring options: