IL_1K01_106

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

1K01|1|A|G|2854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_106 not in the Motif Atlas

Homologous match to IL_5J7L_352

Geometric discrepancy: 0.1422

The information below is about IL_5J7L_352

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

1K01|1|A|G|2813
1K01|1|A|G|2814
*
1K01|1|A|U|2853
1K01|1|A|G|2854
1K01|1|A|C|2855

Current chains

Chain A

23S rRNA

Nearby chains