IL_1K8A_013

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K8A_013 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.0433

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1K8A|1|A|C|290
1K8A|1|A|C|291
1K8A|1|A|G|292
1K8A|1|A|A|293
1K8A|1|A|C|294
1K8A|1|A|C|295
1K8A|1|A|G|296
*
1K8A|1|A|C|355
1K8A|1|A|C|356
1K8A|1|A|A|357
1K8A|1|A|G|358
1K8A|1|A|U|359
1K8A|1|A|A|360
1K8A|1|A|C|361
1K8A|1|A|G|362

Current chains

Chain A

23S RRNA

Nearby chains