IL_1K8A_034
3D structure
- PDB id
- 1K8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGUAG*CAAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1K8A_034 not in the Motif Atlas
- Geometric match to IL_4V9F_033
- Geometric discrepancy: 0.0309
- The information below is about IL_4V9F_033
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.4
- Basepair signature
- cWW-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
1K8A|1|A|G|952
1K8A|1|A|G|953
1K8A|1|A|U|954
1K8A|1|A|A|955
1K8A|1|A|G|956
*
1K8A|1|A|C|1011
1K8A|1|A|A|1012
1K8A|1|A|A|1013
1K8A|1|A|A|1014
1K8A|1|A|C|1015
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain J
- RIBOSOMAL PROTEIN L10E
- Chain O
- RIBOSOMAL PROTEIN L18
- Chain R
- RIBOSOMAL PROTEIN L21E
- Chain X
- RIBOSOMAL PROTEIN L30
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