IL_1K8A_048
3D structure
- PDB id
- 1K8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAUGGAAG*UGGAC
- Length
- 13 nucleotides
- Bulged bases
- 1K8A|1|A|G|1315
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1K8A_048 not in the Motif Atlas
- Homologous match to IL_4V9F_048
- Geometric discrepancy: 0.042
- The information below is about IL_4V9F_048
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.9
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
1K8A|1|A|G|1312
1K8A|1|A|A|1313
1K8A|1|A|U|1314
1K8A|1|A|G|1315
1K8A|1|A|G|1316
1K8A|1|A|A|1317
1K8A|1|A|A|1318
1K8A|1|A|G|1319
*
1K8A|1|A|U|1338
1K8A|1|A|G|1339
1K8A|1|A|G|1340
1K8A|1|A|A|1341
1K8A|1|A|C|1342
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain E
- RIBOSOMAL PROTEIN L4
- Chain U
- RIBOSOMAL PROTEIN L24
- Chain Z
- RIBOSOMAL PROTEIN L32E
Coloring options: