IL_4V9F_048

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAUGGAAG*UGGAC

Length

13 nucleotides

Bulged bases (A, C, G, U)

1315G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.3

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

4V9F|1|0|G|1312
4V9F|1|0|A|1313
4V9F|1|0|U|1314
4V9F|1|0|G|1315
4V9F|1|0|G|1316
4V9F|1|0|A|1317
4V9F|1|0|A|1318
4V9F|1|0|G|1319
*
4V9F|1|0|U|1338
4V9F|1|0|G|1339
4V9F|1|0|G|1340
4V9F|1|0|A|1341
4V9F|1|0|C|1342

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain Y

50S ribosomal protein L32e