IL_1K8A_058

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGGAAG*CAGGAAG

Length

13 nucleotides

Bulged bases

1K8A|1|A|G|1604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K8A_058 not in the Motif Atlas

Homologous match to IL_4V9F_058

Geometric discrepancy: 0.0555

The information below is about IL_4V9F_058

Detailed Annotation

Kink-turn

Broad Annotation

Kink-turn

Motif group

IL_32016.1

Basepair signature

cWW-tSH-tSH-tSS-tHS-L-R-cWW

Number of instances in this motif group

1

Unit IDs

1K8A|1|A|U|1587
1K8A|1|A|G|1588
1K8A|1|A|G|1589
1K8A|1|A|A|1590
1K8A|1|A|A|1591
1K8A|1|A|G|1592
*
1K8A|1|A|C|1602
1K8A|1|A|A|1603
1K8A|1|A|G|1604
1K8A|1|A|G|1605
1K8A|1|A|A|1606
1K8A|1|A|A|1607
1K8A|1|A|G|1608

Current chains

Chain A

23S RRNA

Nearby chains

Chain 1

RIBOSOMAL PROTEIN L37Ae

Chain Q

RIBOSOMAL PROTEIN L19E