IL_1K8A_064

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

1K8A|1|A|A|2022

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K8A_064 not in the Motif Atlas

Homologous match to IL_4V9F_064

Geometric discrepancy: 0.0546

The information below is about IL_4V9F_064

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

1K8A|1|A|C|1826
1K8A|1|A|G|1827
*
1K8A|1|A|C|2021
1K8A|1|A|A|2022
1K8A|1|A|G|2023

Current chains

Chain A

23S RRNA

Nearby chains