IL_1K8A_097
3D structure
- PDB id
- 1K8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGUGCG*UUAAG
- Length
- 11 nucleotides
- Bulged bases
- 1K8A|1|A|A|2890
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1K8A_097 not in the Motif Atlas
- Homologous match to IL_4V9F_099
- Geometric discrepancy: 0.0461
- The information below is about IL_4V9F_099
- Detailed Annotation
- tHS double platform
- Broad Annotation
- No text annotation
- Motif group
- IL_48489.1
- Basepair signature
- cWW-tSH-L-tHH-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
1K8A|1|A|U|2864
1K8A|1|A|G|2865
1K8A|1|A|U|2866
1K8A|1|A|G|2867
1K8A|1|A|C|2868
1K8A|1|A|G|2869
*
1K8A|1|A|U|2888
1K8A|1|A|U|2889
1K8A|1|A|A|2890
1K8A|1|A|A|2891
1K8A|1|A|G|2892
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain D
- RIBOSOMAL PROTEIN L3
- Chain V
- RIBOSOMAL PROTEIN L24E
Coloring options: