IL_1K8A_102
3D structure
- PDB id
- 1K8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UACCC*GAACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1K8A_102 not in the Motif Atlas
- Geometric match to IL_4V9F_104
- Geometric discrepancy: 0.049
- The information below is about IL_4V9F_104
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.11
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
1K8A|1|B|U|3033
1K8A|1|B|A|3034
1K8A|1|B|C|3035
1K8A|1|B|C|3036
1K8A|1|B|C|3037
*
1K8A|1|B|G|3043
1K8A|1|B|A|3044
1K8A|1|B|A|3045
1K8A|1|B|C|3046
1K8A|1|B|A|3047
Current chains
- Chain B
- 5S RRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- RIBOSOMAL PROTEIN L5
- Chain O
- RIBOSOMAL PROTEIN L18
Coloring options: