Motif IL_58103.12 Version IL_58103.12 of this group appears in releases 4.0 to 4.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8		9		10	1-3	1-10	4-10	5-6	6-9
1	IL_4WF9_115	4WF9	0.2116	0	Symmetric double minor groove platform	Y	5S rRNA	U	32	U	33	C	34	C	35	C	36	*	G	42	A	43	A	44	C	45	A	46		cWW	ncWS	cWW	ntSW
2	IL_8P9A_368	8P9A	0.1737	0	Symmetric double minor groove platform (H)	AS	5S rRNA	U	32	U	33	C	34	C	35	C	36	*	G	41	A	42	U	43	C	44	A	45	ncSH	cWW	cWS	cWW	tSW
3	IL_8OI5_138	8OI5	0.1699	0		3	5S rRNA	U	32	C	33	C	34	C	35	C	36	*	G	41	A	42	U	43	C	44	A	45	ncSH	cWW	cWS	cWW	ntSW
4	IL_9AXU_128	9AXU	0.1200	0		3	5S rRNA	U	32	U	33	C	34	C	35	C	36	*	G	41	A	42	U	43	C	44	A	45	ncSH	cWW	cWS	cWW	tSW
5	IL_8QYX_168	8QYX	0.1431	0	Symmetric double minor groove platform (H)	B2	5S rRNA	A	32	U	33	C	34	U	35	C	36	*	G	41	A	42	U	43	C	44	U	45	ncSH	cWW	cWS	cWW	tSW
6	IL_9E6Q_108	9E6Q	0.0994	0	Symmetric double minor groove platform (H)	2	5S rRNA	G	38	U	39	C	40	U	41	C	42	*	G	47	A	48	A	49	C	50	C	51		cWW	ncWS	cWW	tSW
7	IL_9DFE_113	9DFE	0.1101	0		1B	5S rRNA	U	34	U	35	C	36	C	37	C	38	*	G	44	A	45	A	46	C	47	A	48	ncSH	cWW	cWS	cWW	tSW
8	IL_4V9F_104	4V9F	0.0000	0	Symmetric double minor groove platform	9	5S rRNA	U	33	A	34	C	35	C	36	C	37	*	G	43	A	44	A	45	C	46	A	47	cSH	cWW	cWS	cWW	tSW
9	IL_5NS3_002	5NS3	0.1060	0	Symmetric double minor groove platform	C	double-stranded RNA	A	34	C	35	C	36	C	37	C	38	*	G	44	A	45	A	46	C	47	U	48	ncSH	cWW	cWS	cWW	tSW
10	IL_8B0X_174	8B0X	0.2048	0		b	5S rRNA	A	34	C	35	C	36	C	37	C	38	*	G	44	A	45	A	46	C	47	U	48	ncSH	cWW	cWS	cWW	tSW
11	IL_7A0S_113	7A0S	0.4122	0		Y	5S rRNA	A	36	C	37	C	38	C	39	C	40	*	G	46	A	47	A	48	C	49	U	50	ncSH	ncWW		cWW
12	IL_1MJI_004	1MJI	0.7368	0	Symmetric double minor groove platform	D	5S rRNA fragment	A	34	C	35	C	36	C	37	C	38	*	G	44	A	45	A	46	C	47	U	48	ncSH	cWW	cWS	cWW	tSW

3D structures

Complete motif including flanking bases

Sequence	Counts
ACCCC*GAACU	4
UUCCC*GAACA	2
UUCCC*GAUCA	2
UCCCC*GAUCA	1
AUCUC*GAUCU	1
GUCUC*GAACC	1
UACCC*GAACA	1

Non-Watson-Crick part of the motif

Sequence	Counts
CCC*AAC	4
UCC*AAC	2
UCC*AUC	2
CCC*AUC	1
UCU*AUC	1
UCU*AAC	1
ACC*AAC	1

Release history

Release	4.0
Date	2025-08-13
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Symmetric double minor groove platform (4)
Symmetric double minor groove platform (H) (3)
Basepair signature: cWW-cSH-cWS-L-tSW-R-R-cWW
Heat map statistics: Min 0.08 | Avg 0.29 | Max 0.83

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Coloring options: Nucleotide numbers

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