IL_1K9M_044

3D structure

PDB id

1K9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of tylosin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGAG*CUACC

Length

10 nucleotides

Bulged bases

1K9M|1|A|G|1165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K9M_044 not in the Motif Atlas

Homologous match to IL_4V9F_043

Geometric discrepancy: 0.1007

The information below is about IL_4V9F_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

1K9M|1|A|G|1163
1K9M|1|A|U|1164
1K9M|1|A|G|1165
1K9M|1|A|A|1166
1K9M|1|A|G|1167
*
1K9M|1|A|C|1179
1K9M|1|A|U|1180
1K9M|1|A|A|1181
1K9M|1|A|C|1182
1K9M|1|A|C|1183

Current chains

Chain A

23S RRNA

Nearby chains