Motif IL_30542.3 Version IL_30542.3 of this group appears in releases 3.80 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-7 | 5-6 | 7-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6DCC_001 | 6DCC | 0.4916 | 0 | B | human 7SK RNA stem-loop 1 proximal methylated | C | 102 | C | 103 | G | 104 | C | 105 | U | 106 | * | A | 3 | U | 4 | G | 5 | cWW | cWW | ||
| 2 | IL_8C3A_058 | 8C3A | 0.0000 | 2 | 1 | LSU rRNA | G | 1246 | A | 1247 | A | 1248 | U | 1249 | C | 1250 | * | G | 1230 | G | 1233 | C | 1234 | cWW | cWW | ||
| 3 | IL_4V9F_043 | 4V9F | 0.3552 | 2 | 0 | LSU rRNA | C | 1179 | U | 1180 | A | 1181 | C | 1182 | C | 1183 | * | G | 1163 | A | 1166 | G | 1167 | cWW | ncWW | cWW | |
| 4 | IL_7A0S_039 | 7A0S | 0.8777 | 2 | X | LSU rRNA | C | 1087 | A | 1088 | C | 1089 | C | 1090 | C | 1091 | * | G | 1070 | G | 1073 | G | 1074 | cWW | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCGCU*AUG | 1 |
| GAAUC*GUGGC | 1 |
| CUACC*GUGAG | 1 |
| CACCC*GUUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGC*U | 1 |
| AAU*UGG | 1 |
| UAC*UGA | 1 |
| ACC*UUG | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-L-cWW-L
- Heat map statistics
- Min 0.36 | Avg 0.51 | Max 0.97
Coloring options: