IL_1K9M_049

3D structure

PDB id

1K9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of tylosin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUAGUAG*UGAACU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K9M_049 not in the Motif Atlas

Homologous match to IL_4V9F_049

Geometric discrepancy: 0.0298

The information below is about IL_4V9F_049

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

1K9M|1|A|A|1367
1K9M|1|A|U|1368
1K9M|1|A|A|1369
1K9M|1|A|G|1370
1K9M|1|A|U|1371
1K9M|1|A|A|1372
1K9M|1|A|G|1373
*
1K9M|1|A|U|2052
1K9M|1|A|G|2053
1K9M|1|A|A|2054
1K9M|1|A|A|2055
1K9M|1|A|C|2056
1K9M|1|A|U|2057

Current chains

Chain A

23S RRNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN L4

Chain S

RIBOSOMAL PROTEIN L22