IL_1KC8_013

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KC8_013 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.0414

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1KC8|1|A|C|290
1KC8|1|A|C|291
1KC8|1|A|G|292
1KC8|1|A|A|293
1KC8|1|A|C|294
1KC8|1|A|C|295
1KC8|1|A|G|296
*
1KC8|1|A|C|355
1KC8|1|A|C|356
1KC8|1|A|A|357
1KC8|1|A|G|358
1KC8|1|A|U|359
1KC8|1|A|A|360
1KC8|1|A|C|361
1KC8|1|A|G|362

Current chains

Chain A

23S RRNA

Nearby chains