3D structure

PDB id
1KC8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.01 Å

Loop

Sequence
UGACCG*CCAGUAA
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1KC8_020 not in the Motif Atlas
Geometric match to IL_4V9F_019
Geometric discrepancy: 0.0443
The information below is about IL_4V9F_019
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_16458.4
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

1KC8|1|A|U|567
1KC8|1|A|G|568
1KC8|1|A|A|569
1KC8|1|A|C|570
1KC8|1|A|C|571
1KC8|1|A|G|572
*
1KC8|1|A|C|585
1KC8|1|A|C|586
1KC8|1|A|A|587
1KC8|1|A|G|588
1KC8|1|A|U|589
1KC8|1|A|A|590
1KC8|1|A|A|591

Current chains

Chain A
23S RRNA

Nearby chains

Chain X
RIBOSOMAL PROTEIN L30

Coloring options:


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