IL_1KC8_045

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

GU*AAUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KC8_045 not in the Motif Atlas

Homologous match to IL_4V9F_045

Geometric discrepancy: 0.0357

The information below is about IL_4V9F_045

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_76709.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

1KC8|1|A|G|1269
1KC8|1|A|U|1270
*
1KC8|1|A|A|1286
1KC8|1|A|A|1287
1KC8|1|A|U|1288
1KC8|1|A|C|1289

Current chains

Chain A

23S RRNA

Nearby chains

Chain X

RIBOSOMAL PROTEIN L30

Chain Z

RIBOSOMAL PROTEIN L32E