IL_1KC8_051

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

GCACU*AGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KC8_051 not in the Motif Atlas

Homologous match to IL_4V9F_051

Geometric discrepancy: 0.0588

The information below is about IL_4V9F_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

1KC8|1|A|G|1425
1KC8|1|A|C|1426
1KC8|1|A|A|1427
1KC8|1|A|C|1428
1KC8|1|A|U|1429
*
1KC8|1|A|A|1437
1KC8|1|A|G|1438
1KC8|1|A|C|1439

Current chains

Chain A

23S RRNA

Nearby chains

Chain 3

RIBOSOMAL PROTEIN L39E

Chain Q

RIBOSOMAL PROTEIN L19E

Chain S

RIBOSOMAL PROTEIN L22