IL_1KC8_058

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

UGGAAG*CAGGAAG

Length

13 nucleotides

Bulged bases

1KC8|1|A|G|1604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KC8_058 not in the Motif Atlas

Homologous match to IL_4V9F_058

Geometric discrepancy: 0.0491

The information below is about IL_4V9F_058

Detailed Annotation

Kink-turn

Broad Annotation

Kink-turn

Motif group

IL_32016.1

Basepair signature

cWW-tSH-tSH-tSS-tHS-L-R-cWW

Number of instances in this motif group

1

Unit IDs

1KC8|1|A|U|1587
1KC8|1|A|G|1588
1KC8|1|A|G|1589
1KC8|1|A|A|1590
1KC8|1|A|A|1591
1KC8|1|A|G|1592
*
1KC8|1|A|C|1602
1KC8|1|A|A|1603
1KC8|1|A|G|1604
1KC8|1|A|G|1605
1KC8|1|A|A|1606
1KC8|1|A|A|1607
1KC8|1|A|G|1608

Current chains

Chain A

23S RRNA

Nearby chains

Chain 1

RIBOSOMAL PROTEIN L37Ae

Chain Q

RIBOSOMAL PROTEIN L19E