3D structure

PDB id
1KC8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.01 Å

Loop

Sequence
CGCAAAU*ACUCGUACG
Length
16 nucleotides
Bulged bases
1KC8|1|A|A|1857, 1KC8|1|A|C|1872, 1KC8|1|A|C|1876
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1KC8_065 not in the Motif Atlas
Homologous match to IL_4V9F_065
Geometric discrepancy: 0.0337
The information below is about IL_4V9F_065
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.5
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

1KC8|1|A|C|1854
1KC8|1|A|G|1855
1KC8|1|A|C|1856
1KC8|1|A|A|1857
1KC8|1|A|A|1858
1KC8|1|A|A|1859
1KC8|1|A|U|1860
*
1KC8|1|A|A|1869
1KC8|1|A|C|1870
1KC8|1|A|U|1871
1KC8|1|A|C|1872
1KC8|1|A|G|1873
1KC8|1|A|U|1874
1KC8|1|A|A|1875
1KC8|1|A|C|1876
1KC8|1|A|G|1877

Current chains

Chain A
23S RRNA

Nearby chains

Chain 1
RIBOSOMAL PROTEIN L37Ae
Chain C
RIBOSOMAL PROTEIN L2

Coloring options:


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