IL_1KC8_071

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

1KC8|1|A|G|1979, 1KC8|1|A|U|1985, 1KC8|1|A|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KC8_071 not in the Motif Atlas

Homologous match to IL_4V9F_071

Geometric discrepancy: 0.0349

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1KC8|1|A|C|1975
1KC8|1|A|G|1976
1KC8|1|A|U|1977
1KC8|1|A|A|1978
1KC8|1|A|G|1979
1KC8|1|A|U|1980
1KC8|1|A|A|1981
1KC8|1|A|C|1982
1KC8|1|A|C|1983
1KC8|1|A|U|1984
1KC8|1|A|U|1985
1KC8|1|A|G|1986
*
1KC8|1|A|C|2002
1KC8|1|A|U|2003
1KC8|1|A|U|2004
1KC8|1|A|G|2005

Current chains

Chain A

23S RRNA

Nearby chains