IL_1KC8_073

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

AAG*CUAU

Length

7 nucleotides

Bulged bases

1KC8|1|A|A|2096, 1KC8|1|A|U|2648, 1KC8|1|A|A|2649

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KC8_073 not in the Motif Atlas

Homologous match to IL_4V9F_073

Geometric discrepancy: 0.0421

The information below is about IL_4V9F_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

1KC8|1|A|A|2095
1KC8|1|A|A|2096
1KC8|1|A|G|2097
*
1KC8|1|A|C|2647
1KC8|1|A|U|2648
1KC8|1|A|A|2649
1KC8|1|A|U|2650

Current chains

Chain A

23S RRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN L3

Chain S

RIBOSOMAL PROTEIN L22