Motif IL_80025.3 Version IL_80025.3 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-3 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9AXU_086 | 9AXU | 0.1000 | 2 | 2 | LSU rRNA | U | 3076 | A | 3077 | C | 3079 | * | G | 2484 | A | 2486 | cWW | cSH | cWW |
| 2 | IL_9H3G_101 | 9H3G | 0.0771 | 2 | A | LSU rRNA | U | 2980 | A | 2981 | C | 2983 | * | G | 2394 | A | 2396 | cWW | cSH | cWW |
| 3 | IL_8GLP_129 | 8GLP | 0.0503 | 2 | L5 | LSU rRNA | U | 4558 | A | 4559 | C | 4561 | * | G | 3900 | A | 3902 | cWW | cSH | cWW |
| 4 | IL_8OI5_094 | 8OI5 | 0.0661 | 2 | 1 | LSU rRNA | U | 2953 | A | 2954 | C | 2956 | * | G | 2374 | A | 2376 | cWW | cSH | cWW |
| 5 | IL_9PN5_089 | 9PN5 | 0.0000 | 2 | A1 | LSU rRNA | U | 2981 | A | 2982 | C | 2984 | * | G | 2396 | A | 2398 | cWW | cSH | cWW |
| 6 | IL_9E6Q_076 | 9E6Q | 0.3620 | 2 | 1 | LSU rRNA | C | 2726 | A | 2728 | C | 2729 | * | G | 2174 | OMG | 2176 | cWW | cWW | |
| 7 | IL_4V9F_073 | 4V9F | 0.3947 | 2 | 0 | LSU rRNA | C | 2647 | A | 2649 | U | 2650 | * | A | 2095 | G | 2097 | cWW | cWW | |
| 8 | IL_4WF9_079 | 4WF9 | 0.4612 | 2 | X | LSU rRNA | C | 2639 | A | 2641 | U | 2642 | * | A | 2081 | G | 2083 | cWW | cWW | |
| 9 | IL_8B0X_140 | 8B0X | 0.4510 | 2 | a | LSU rRNA | C | 2616 | A | 2618 | U | 2619 | * | A | 2058 | G | 2060 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UACC*GAA | 5 |
| CUAU*ACG | 2 |
| CUAC*GC(OMG) | 1 |
| CUAU*AAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AC*A | 5 |
| UA*C | 3 |
| UA*A | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (9)
- Basepair signature
- cWW-cSH-cWW
- Heat map statistics
- Min 0.04 | Avg 0.26 | Max 0.51
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