IL_1KC8_075

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

1KC8|1|A|A|2474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KC8_075 not in the Motif Atlas

Homologous match to IL_4V9F_075

Geometric discrepancy: 0.0491

The information below is about IL_4V9F_075

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

1KC8|1|A|G|2111
1KC8|1|A|A|2112
*
1KC8|1|A|U|2473
1KC8|1|A|A|2474
1KC8|1|A|C|2475
1KC8|1|A|C|2476

Current chains

Chain A

23S RRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN L2