IL_1KC8_086

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

CC*GUCG

Length

6 nucleotides

Bulged bases

1KC8|1|A|U|2607, 1KC8|1|A|C|2608

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KC8_086 not in the Motif Atlas

Homologous match to IL_4V9F_088

Geometric discrepancy: 0.0463

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

1KC8|1|A|C|2547
1KC8|1|A|C|2548
*
1KC8|1|A|G|2606
1KC8|1|A|U|2607
1KC8|1|A|C|2608
1KC8|1|A|G|2609

Current chains

Chain A

23S RRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN L3

Chain L

RIBOSOMAL PROTEIN L14