IL_44609.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2	break		3		4	1-4	2-3	2-4
1	IL_4ERD_001	4ERD	0.6552	2		C+D	RNA (22-mer)	C	120	C	123	*	G	146	G	147	cWW	cWW	ntsS
2	IL_8P9A_363	8P9A	0.3863	2	Multiple bulged bases	AR	LSU rRNA	C	3349	C	3350	*	G	3353	G	3356	cWW	cWW
3	IL_8OI5_133	8OI5	0.3328	2	Multiple bulged bases (H)	1	LSU rRNA	C	3314	C	3315	*	G	3318	G	3321	cWW	cWW
4	IL_7EU9_001	7EU9	0.3307	2	Multiple bulged bases	B	RNA (43-MER)	C	11	C	12	*	G	16	G	19	cWW	cWW
5	IL_7D3J_001	7D3J	0.2993	2	Multiple bulged bases	B	RNA (43-MER)	C	11	C	12	*	G	16	G	19	cWW	cWW
6	IL_9AXU_112	9AXU	0.2261	2		2	LSU rRNA	C	3159	U	3160	*	A	3173	G	3176	cWW	cWW
7	IL_8OI5_119	8OI5	0.2267	2		1	LSU rRNA	C	3035	U	3036	*	A	3049	G	3052	cWW	cWW
8	IL_4V9F_088	4V9F	0.0496	2	Multiple bulged bases	0	LSU rRNA	C	2547	C	2548	*	G	2606	G	2609	cWW	cWW
9	IL_9E6Q_090	9E6Q	0.0000	2	Multiple bulged bases (H)	1	LSU rRNA	C	2626	U	2627	*	A	2685	G	2688	cWW	cWW
10	IL_9AXU_100	9AXU	0.0861	2		2	LSU rRNA	C	2976	U	2977	*	A	3035	G	3038	cWW	cWW
11	IL_8GLP_148	8GLP	0.1000	2		L5	LSU rRNA	C	4458	U	4459	*	A	4517	G	4520	cWW	cWW
12	IL_8P9A_336	8P9A	0.1390	2	Multiple bulged bases (H)	AR	LSU rRNA	C	2881	U	2882	*	A	2940	G	2943	cWW	cWW
13	IL_9DFE_105	9DFE	0.1308	3		1A	LSU rRNA	C	2695	U	2696	*	A	2711	G	2714	cWW	cWW
14	IL_7A0S_097	7A0S	0.1741	3	Multiple bulged bases	X	LSU rRNA	C	2674	U	2675	*	A	2690	G	2694	cWW	cWW
15	IL_4WF9_103	4WF9	0.3786	2	Multiple bulged bases	X	LSU rRNA	U	2722	U	2723	*	A	2738	G	2741	cWW	cWW
16	IL_8B0X_164	8B0X	0.3745	2	Multiple bulged bases (H)	a	LSU rRNA	U	2699	U	2700	*	A	2715	G	2718	cWW	cWW
17	IL_8GLP_163	8GLP	0.4140	2	Multiple bulged bases (H)	L5	LSU rRNA	U	4641	U	4642	*	A	4655	G	4658	cWW	cWW
18	IL_9E6Q_098	9E6Q	0.3646	2		1	LSU rRNA	U	2810	U	2811	*	A	2824	G	2827	cWW	cWW
19	IL_3IGI_013	3IGI	0.2782	2	Multiple bulged bases	A	Group IIC intron	U	365	A	366	*	U	375	G	378	cWW	cWW
20	IL_9DFE_098	9DFE	0.2811	2		1A	LSU rRNA	C	2512	G	2513	*	C	2571	G	2574	cWW	cWW
21	IL_7A0S_090	7A0S	0.3138	2	Multiple bulged bases	X	LSU rRNA	C	2491	G	2492	*	C	2550	G	2553	cWW	cWW
22	IL_4WF9_096	4WF9	0.3773	2	Multiple bulged bases (H)	X	LSU rRNA	C	2539	A	2540	*	U	2598	G	2601	cWW	cWW
23	IL_8B0X_156	8B0X	0.4425	2		a	LSU rRNA	C	2516	A	2517	*	U	2575	G	2578	cWW	cWW
24	IL_8GLP_038	8GLP	0.5459	3		L5	LSU rRNA	C	737	G	740	*	C	924	G	926	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CU*AACG	5
CC*GUUG	4
UU*ACUG	2
CG*CACG	2
CA*UACG	2
CGAC*GG	1
CU*AAUG	1
CC*GUCG	1
CU*AUAAG	1
CU*ACAUG	1
UU*AUAG	1
UU*AAUG	1
UA*UACG	1
CCGG*CCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
*AC	10
*UU	4
*AU	2
*CU	2
GA*	1
*UC	1
*UAA	1
*CAU	1
*UA	1
CG*C	1

Release history

Release	4.1
Date	2025-09-10
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_44609.2 Version IL_44609.2 of this group appears in releases 4.1 to 4.1 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_44609.2 Version IL_44609.2 of this group appears in releases 4.1 to 4.1

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Csv

Json