IL_1KC8_090
3D structure
- PDB id
- 1KC8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.01 Å
Loop
- Sequence
- AUAGUAC*GGAACU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1KC8_090 not in the Motif Atlas
- Homologous match to IL_4V9F_092
- Geometric discrepancy: 0.0371
- The information below is about IL_4V9F_092
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
1KC8|1|A|A|2689
1KC8|1|A|U|2690
1KC8|1|A|A|2691
1KC8|1|A|G|2692
1KC8|1|A|U|2693
1KC8|1|A|A|2694
1KC8|1|A|C|2695
*
1KC8|1|A|G|2700
1KC8|1|A|G|2701
1KC8|1|A|A|2702
1KC8|1|A|A|2703
1KC8|1|A|C|2704
1KC8|1|A|U|2705
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain D
- RIBOSOMAL PROTEIN L3
- Chain G
- RIBOSOMAL PROTEIN L6
- Chain L
- RIBOSOMAL PROTEIN L14
Coloring options: